Accession Reference Peptide Untreated.R1 Untreated.R2 Untreated.R3 Treated.R1 Treated.R2 Treated.R3 Ratio1 Adj.ratio1 Ratio2 Adj.ratio1.1 Ratio3 Adj.ratio1.2 x.Untreated.R1 x.Untreated.R2 x.Untreated.R3 y.Treated.R1 y.Treated.R2 y.Treated.R3 LPE z.stats meand0 meand3 Ratio 4504517 heat shock 27kDa protein 1; heat shock 27kD protei  R.QLS*SGVSEIR.H 1720000 14600000 9230000 3860000 43100000 22900000 0.45 0.5242304 0.34 0.3592228 0.4 0.48 24.64051 23.96017 24.11653 25.05508 25.44286 24.44884 -1.08449525 24.23907 24.98226 0.97025129 4506669 ribosomal protein P1 isoform 1; 60S acidic ribosom  K.KEES*EES*DDDMGFGLFD.- 15900000 12000000 13500000 28400000 14600000 19300000 0.56 0.6586578 0.82 0.8715989 0.7 0.82 27.84906 23.67723 24.66508 27.9343 23.88114 24.2021 -0.2229835 25.39712333 25.33918 1.002286709 18860916 5-3 exoribonuclease 2; Dhm1-like protein (mous R.KAEDS*DS*EPEPEDNVR.L 126000 1860000 2330000 155000 3420000 4920000 0.81 0.9563567 0.54 0.5767335 0.47 0.56 20.8696 20.98757 22.13052 20.41682 21.78724 22.23023 -0.22005614 21.32923 21.47809667 0.993068908 19913408 "DNA topoisomerase II, beta isozyme; topoisomerase " K.VVEAVNS*DS*DSEFGIPK.K 176000 1350000 1210000 224000 1880000 2420000 0.79 0.9243697 0.72 0.76149 0.5 0.59 21.35175 20.52523 21.1852 20.94805 20.92397 21.20658 -0.04371806 21.02072667 21.0262 0.99973969 20270212 tankyrase 1-binding protein of 182 kDa [Homo sapi  R.VPS*S*DEEVVEEPQSR.R 227000 1760000 2550000 229000 1920000 4440000 0.99 1.1661957 0.92 0.9720749 0.57 0.68 21.71887 20.90785 22.26069 20.9799 20.95435 22.08213 0.38896412 21.62913667 21.33879333 1.013606361 20149594 "heat shock 90kDa protein 1, beta; Heat-shock 90kD " K.IEDVGS*DEEDDSGK.D 160000 1430000 560000 229000 646000 714000 0.7 NA 2.21 2.3474255 0.78 0.92 21.21425 20.60829 20.07369 20.9799 19.38285 19.44556 1.13218441 20.63207667 19.93610333 1.034910199 38327552 Ras-GTPase-activating protein SH3-domain-binding  K.SS*SPAPADIAQTVQEDLR.T 319000 1500000 1970000 409000 1640000 2980000 0.78 0.9175895 0.91 0.9699196 0.66 0.78 22.20973 20.67723 21.88839 21.81665 20.72694 21.50688 0.93768627 21.59178333 21.35015667 1.011317325 29725609 epidermal growth factor receptor isoform a; avian  R.ELVEPLT?PSGEAPNQALLR.I 94500 477000 NA 106000 534000 NA 0.89 NA 0.89 0.9472518 NA NA 20.45456 19.02433 19.90987 19.86862 19.10815 19.90987 0 19.79625333 19.62888 1.008526892 23308579 "unactive progesterone receptor, 23 kD; likely ort " K.DWEDDS*DEDMSNFDR.F 242000 1460000 1330000 813000 4460000 4650000 0.3 0.3501917 0.33 0.3471413 0.29 0.34 21.81119 20.63824 21.32162 22.80781 22.17028 22.1488 -2.47694497 21.25701667 22.37563 0.950007516 23110939 proteasome alpha 3 subunit isoform 2; proteasome  K.ESLKEEDES*DDDNM.- 609000 2620000 1780000 1000000 3240000 2390000 0.61 0.7164706 0.81 0.8575207 0.74 0.88 23.14262 21.48184 21.74207 23.10648 21.70923 21.18858 0.08589066 22.12217667 22.00143 1.005488128 4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16; ATP-dep  R.LLEDS*EES*SEETVSR.A 171000 NA 833000 177000 NA 1040000 0.97 1.1365902 NA NA 0.8 0.94 21.31017 21.0162 20.64658 20.6083 21.0162 19.98815 1.28403165 20.99098333 20.53755 1.022078258 5454088 acidic (leucine-rich) nuclear phosphoprotein 32 fa  R.KRET?DDEGEDD.- 399000 NA 1060000 676000 NA 2040000 0.59 0.6943961 NA NA 0.52 0.61 22.53257 21.95941 20.99426 22.54158 21.95941 20.96014 0 21.82874667 21.82037667 1.000383586 7657441 PDGFA associated protein 1; PDGF associated prote K.S*LDS*DESEDEEDDYQQK.R 494000 NA 6060000 767000 NA 10600000 0.64 0.7577268 NA NA 0.57 0.67 22.84069 23.21352 23.50951 22.72378 23.21352 23.33756 0.30552008 23.18790667 23.09162 1.004169767 7657441 PDGFA associated protein 1; PDGF associated protei  K.KS*LDS*DESEDEEDDYQQK.R 516000 3820000 NA 849000 2920000 NA 0.61 0.7150281 1.31 1.387295 NA NA 22.90355 22.02584 22.53044 22.87032 21.55921 22.53044 0.08693197 22.48661 22.31999 1.007465057 4557890 "keratin 5; Keratin-5; 58 kda cytokeratin; keratin, " R.S*FSTASAITPSVSR.T NA NA 1560000 NA NA 3380000 NA NA NA NA 0.46 0.54 17.00382 17.05631 21.55174 16.99443 17.05049 21.68859 0.01085126 18.53729 18.57783667 0.997817471 4557890 "keratin 5; Keratin-5; 58 kda cytokeratin; keratin, " R.SFST?ASAITPSVSR.T 353000 NA 1540000 585000 NA 396000 0.6 0.7099045 NA NA 3.89 4.59 22.35585 22.00235 21.53313 22.33299 22.00235 18.59514 0.05979143 21.96377667 20.97682667 1.047049538 4885511 nucleolin [Homo sapiens] K.KVVVS*PTKK.V 27500 NA NA 15200 NA NA 1.81 2.128483 NA NA NA NA 18.67368 16.96677 17.00049 17.0667 16.98807 16.99159 0.01656742 17.54698 17.01545333 1.031237879 16306492 cell division cycle 2 protein isoform 2; cell div  K.IGEGT?Y@GVVYK.G 12300 3840000 505000 20400 3550000 439000 0.6 0.7093426 1.08 1.1470733 1.15 1.36 17.51291 22.03338 19.92455 17.49119 21.84106 18.74386 0.35202372 19.82361333 19.35870333 1.024015555 16933546 ribosomal protein P0; 60S acidic ribosomal protei  K.VEAKEES*EES*DEDMGFGLFD.- 12300 NA 1680000 20400 NA 2410000 0.6 0.7093426 NA NA 0.7 0.82 17.51291 20.73794 21.65866 17.49119 20.73794 21.2006 0.04074503 19.96983667 19.80991 1.008073064 20357552 cortactin isoform a; oncogene EMS1; ems1 sequence  K.TQT?PPVS*PAPQPTEER.L 58000 NA 2740000 248000 NA 3800000 0.23 0.2751423 NA NA 0.72 0.85 19.7503 21.58264 22.36437 21.09489 21.58264 21.85757 0 21.23243667 21.5117 0.987018072 27436946 lamin A/C isoform 1 precursor; 70 kDa lamin; pro R.LRLS*PS*PTSQR.S 753000 NA 7620000 853000 NA 16400000 0.88 1.0385491 NA NA 0.46 0.55 23.44883 23.65762 23.83999 22.8771 23.65762 23.96719 0 23.64881333 23.50063667 1.006305219 38327552 Ras-GTPase-activating protein SH3-domain-binding  K.S*SSPAPADIAQTVQEDLR.T 477000 NA 946000 553000 NA 1060000 0.86 1.0147857 NA NA 0.89 1.05 22.79017 22.12017 20.83011 22.25183 22.12017 20.01563 1.40826586 21.91348333 21.46254333 1.021010557 41322908 plectin 1 isoform 3; hemidesmosomal protein 1; ep  R.SS*SVGSSSSYPISPAVSR.T 336000 NA 1760000 369000 NA 2580000 0.91 1.0712578 NA NA 0.68 0.8 22.28464 22.0321 21.72577 21.66817 22.0321 21.29894 1.11387007 22.01417 21.66640333 1.016050964 41322923 plectin 1 isoform 11; hemidesmosomal protein 1; e  R.TSS*EDNLYLAVLR.A 278000 NA 1600000 375000 NA 2120000 0.74 0.8721569 NA NA 0.75 0.89 22.01126 21.81521 21.58827 21.69144 21.81521 21.01563 0.8115161 21.80491333 21.50742667 1.013831811 42542379 serine/arginine repetitive matrix 1; Ser/Arg-rela  K.KET?ES*EAEDNLDDLEK.H 177000 NA 1660000 185000 NA 2400000 0.96 1.1255962 NA NA 0.69 0.82 21.35993 21.50751 21.64138 20.67208 21.50751 21.1946 0.99677533 21.50294 21.12473 1.017903661 44890050 stathmin 1; metablastin; prosolin; oncoprotein 18  R.ASGQAFELILS*PR.S 155000 NA NA 150000 NA NA 1.03 1.2156863 NA NA NA NA 21.16845 16.97668 17.0195 20.36952 17.00403 17.01319 0.0117445 18.38821 18.12891333 1.014302935 34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo  R.SS*GSPYGGGYGSGGGSGGYGSR.R 32600 NA NA 48200 NA NA 0.68 0.7957042 NA NA NA NA 18.91912 17.05648 17.04543 18.73166 16.97521 17.02173 0.15136264 17.67367667 17.5762 1.005545947 7705765 CGI-48 protein [Homo sapiens] R.VQEHEDS*GDS*EVENEAK.G NA NA 1220000 NA NA 2480000 NA 0 NA NA 0.49 0.58 16.99963 17.00269 21.19708 17.02784 17.01919 21.24191 -0.05253546 18.3998 18.42964667 0.998380508 10937869 "survival of motor neuron 2, centromeric isoform d " R.GTGQS*DDS*DIWDDTALIK.A NA NA 967000 NA NA 1540000 NA 0 NA NA 0.63 0.74 17.01431 17.05804 20.86178 17.02971 16.97236 20.5545 0.1595648 18.31137667 18.18552333 1.006920523 32483374 nucleolar protein 5A; nucleolar protein 5A (56kD K.EEPVS*S*GPEEAVGK.S 217000 NA 1380000 300000 NA 4370000 0.72 0.8509804 NA NA 0.32 0.37 21.65387 21.5211 21.37486 21.36952 21.5211 22.0592 0 21.51661 21.64994 0.993841553 34485722 karyopherin alpha 3; importin-alpha-Q2; importin  R.NVPQEESLEDS*DVDADFK.A NA NA 2580000 NA NA 1780000 NA 0 NA NA 1.45 1.71 16.97359 16.96909 22.27757 16.96192 17.0205 20.76345 0.02172385 18.74008333 18.24862333 1.026931347 15082258 chromobox homolog 3; heterochromatin protein HP1  K.RKS*LS*DSESDDSK.S 48000 NA 1840000 56600 NA 1760000 0.85 0.9977136 NA NA 1.05 1.23 19.47728 21.05449 21.7899 18.96343 21.05449 20.74714 1.02452106 20.77389 20.25502 1.025616859 41322908 plectin 1 isoform 3; hemidesmosomal protein 1; e R.SS*SVGSSSSY@PISPAVSR.T 244000 NA NA 180000 NA NA 1.36 1.5947712 NA NA NA NA 21.82306 16.97161 16.97525 20.63255 17.01022 17.02054 -0.0719068 18.58997333 18.22110333 1.020244109 40805860 tumor protein D52-like 2 isoform e [Homo sapiens R.NSATFKS*FEDR.V 164000 NA NA 243000 NA NA 0.67 0.7939966 NA NA NA NA 21.24987 17.03675 16.966 21.06551 16.99627 17.01876 0.07538356 18.41754 18.36018 1.003124152 46389550 endosulfine alpha isoform 1 [Homo sapiens] K.YFDS*GDYNMAK.A 142000 NA NA 187000 NA NA 0.76 0.8933627 NA NA NA NA 21.04207 16.97293 16.97434 20.68759 16.95878 17.01408 0.02636164 18.32978 18.22015 1.006016965 46852390 coiled-coil domain containing 6 [Homo sapiens K.LDQPVS*APPS*PR.D 216000 NA NA 150000 NA NA 1.44 1.6941176 NA NA NA NA 21.64721 17.05295 17.03325 20.36952 17.03266 16.97588 0.10685184 18.57780333 18.12602 1.024924574 6005830 plakophilin 3 [Homo sapiens] R.LS*SGFDDIDLPSAVK.Y 175000 NA NA 171000 NA NA 1.02 1.2039904 NA NA NA NA 21.34353 16.9651 16.97405 20.55855 17.03156 17.04858 -0.12377984 18.42756 18.21289667 1.011786337 16945970 PC4 and SFRS1 interacting protein 1; transcripti K.TGVTS*TS*DSEEEGDDQEGEK.K 161000 NA NA 253000 NA NA 0.64 0.7486631 NA NA NA NA 21.22324 16.9989 17.01638 21.12369 17.00813 17.03553 -0.01719981 18.41284 18.38911667 1.001290075 21327667 block of proliferation 1 [Homo sapiens] R.IGDEYAEDS*S*DEEDIR.N 182000 NA NA 214000 NA NA 0.85 1.0005498 NA NA NA NA 21.40012 17.06075 17.01069 20.88216 16.97613 17.06425 0.1576034 18.49052 18.30751333 1.00999626 4758958 "cAMP-dependent protein kinase, regulatory subunit" R.VADAKGDS*ES*EEDEDLEVPVPSR.F 321000 NA NA 550000 NA NA 0.58 0.686631 NA NA NA NA 22.21875 16.97471 17.02379 22.24399 16.99589 17.06279 -0.04699784 18.73908333 18.76755667 0.998482843 38201619 eukaryotic translation initiation factor 4 gamma R.SFS*KEVEER.S 193000 NA NA 299000 NA NA 0.65 0.7593941 NA NA NA NA 21.48478 17.01392 17.06206 21.3647 17.00935 17.00513 0.1060212 18.52025333 18.45972667 1.00327885 46195723 DKFZP564M182 protein [Homo sapiens] K.ATNES*EDEIPQLVPIGK.K 211000 NA NA 225000 NA NA 0.94 1.103268 NA NA NA NA 21.61342 17.06659 17.04096 20.95448 17.03209 16.97485 0.1231356 18.57365667 18.32047333 1.013819694 46049092 nebulin-related anchoring protein isoform C [Hom K.TNAANLSDARY@KES*WR.N 159000 NA NA 337000 NA NA 0.47 0.5550707 NA NA NA NA 21.20521 17.01202 17.0143 21.5373 17.06133 17.02491 -0.09183417 18.41051 18.54118 0.992952444 4507555 thymopoietin [Homo sapiens] K.GPPDFS*S*DEEREPT?PVLGSGAAAAGR.S 253000 NA NA 357000 NA NA 0.71 0.8337453 NA NA NA NA 21.87532 17.05783 17.00447 21.62048 16.97414 17.05354 0.1558623 18.64587333 18.54938667 1.00520161 34098946 nuclease sensitive element binding protein 1; DNA  K.AADPPAENSS*APEAEQGGAE.- 91100 NA NA 71100 NA NA 1.28 1.5074047 NA NA NA NA 20.4017 17.00848 16.97254 19.29248 17.05405 16.99171 -0.03570315 18.12757333 17.77941333 1.019582198 41322908 plectin 1 isoform 3; hemidesmosomal protein 1; ep  R.S*SSVGSSSSYPISPAVSR.T 262000 NA NA 296000 NA NA 0.89 1.0413355 NA NA NA NA 21.92575 17.057 17.01039 21.35015 17.00497 17.0302 0.09690188 18.66438 18.46177333 1.010974388 41322908 plectin 1 isoform 3; hemidesmosomal protein 1; ep  R.S*S*SVGSSSSYPISPAVSR.T 244000 NA NA 210000 NA NA 1.16 1.3669468 NA NA NA NA 21.82306 16.98616 17.05645 20.85494 17.01083 17.00842 0.08946252 18.62189 18.29139667 1.018068239 40789256 signal recognition particle 72kDa [Homo sapiens] K.TVS*S*PPTSPRPGSAATVSASTSNIIPPR.H 307000 NA NA 198000 NA NA 1.55 1.8241236 NA NA NA NA 22.15442 16.98943 16.97215 20.77005 17.04079 17.01179 -0.07383211 18.70533333 18.27421 1.0235919 4507555 thymopoietin [Homo sapiens] K.GPPDFS*S*DEEREPTPVLGSGAAAAGR.S 425000 4820000 5530000 1010000 5820000 7720000 0.42 0.4950495 0.8281787 0.8782383 NA NA 22.62364 22.3613 23.37747 23.12084 22.55426 22.88017 -0.50456685 22.78747 22.85175667 0.997186795 7706549 CDC2-related protein kinase 7 [Homo sapiens] R.HLLTDLPLPPELPGGDLS*PPDS*PEPK.A 448000 NA NA 413000 NA NA 1.08 1.2761715 NA NA NA NA 22.69968 17.03822 17.00818 21.8307 17.00376 16.98151 0.0641716 18.91536 18.60532333 1.016663869 7657234 small acidic protein; likely ortholog of mouse sma  R.S*ASPDDDLGSSNWEAADLGNEER.K 320000 NA NA 488000 NA NA 0.66 0.7714561 NA NA NA NA 22.21425 17.00679 17.03254 22.07143 16.99945 16.96847 0.11933072 18.75119333 18.67978333 1.003822849 7657351 MYB binding protein 1a; p53-activated protein-2 [ K.EIPSATQS*PISK.K 120000 NA NA 123000 NA NA 0.98 1.1477762 NA NA NA NA 20.79921 16.95851 17.01532 20.08321 17.05947 17.03323 -0.03336556 18.25768 18.05863667 1.011022058 4758258 eukaryotic translation initiation factor 4E bindi R.RVVLGDGVQLPPGDYSTT?PGGTLFS*TTPGGTR.I 88400 NA 1030000 114000 NA 980000 0.78 0.9122807 NA NA 1.05 1.24 20.3583 20.68598 20.95284 19.97359 20.68598 19.90242 0.70084424 20.66570667 20.18733 1.023696877 27436946 lamin A/C isoform 1 precursor; 70 kDa lamin; prog  R.ASS*HSSQT?QGGGSVTK.K NA 2140000 4740000 NA 3480000 7130000 NA 0 0.61 0.652113 0.66 0.78 22.48404 21.18988 23.15508 22.48404 21.81233 22.76547 0 22.27633333 22.35394667 0.996527981 31543385 "phosphate cytidylyltransferase 1, choline, alpha " R.MLQAIS*PKQS*PSSSPT?R.E NA 4210000 5300000 NA 2270000 2580000 NA 0 1.85 1.9667291 2.05 2.42 22.85283 22.16609 23.31619 22.85283 21.19593 21.29894 2.53790571 22.77837 21.78256667 1.04571561 19923466 splicing coactivator subunit SRm300; RNA binding  K.THTTALAGRS*PS*PASGR.R NA 988000 2040000 NA 1310000 1590000 NA 0 0.75 0.7997863 1.28 1.51 21.28896 20.07485 21.93876 21.28896 20.40281 20.6006 0 21.10085667 20.76412333 1.016217074 4759098 "splicing factor, arginine/serine-rich 10 (transfor " R.RRS*PSPY@YSR.G NA 3120000 2560000 NA 4760000 3480000 NA 0 0.66 0.6950819 0.74 0.87 22.02451 21.73382 22.26634 22.02451 22.2642 21.73066 0 22.00822333 22.00645667 1.000080279 7705765 CGI-48 protein [Homo sapiens R.KT?SS*DDESEEDEDDLLQR.T NA 663000 NA NA 482000 NA NA 0 1.38 1.4586624 NA NA 17.02686 19.49935 17.05258 17.03549 18.96034 17.00783 0.08334135 17.85959667 17.66788667 1.01085076 7705765 CGI-48 protein [Homo sapiens R.KT?SS*DDESEEDEDDLLQR.T 345000 NA NA 233000 NA NA 1.48 1.7419843 NA NA NA NA 22.32277 17.00208 17.03605 21.00488 17.03262 17.02928 0.01260693 18.78696667 18.35559333 1.02350092